The 2.0 version of rSNPBase

Variant report

Variant rs7553899
Chromosome Location chr1:179277349-179277350
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264000-179279600 Weak transcription Fetal Brain Male brain
4 chr1:179264200-179290200 Weak transcription Aorta Aorta
5 chr1:179264600-179278600 Weak transcription Colonic Mucosa Colon
6 chr1:179264600-179281200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:179264600-179304600 Weak transcription Right Ventricle heart
9 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
10 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
11 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:179264800-179277800 Weak transcription Brain Cingulate Gyrus brain
13 chr1:179264800-179278800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:179264800-179279400 Weak transcription HSMMtube muscle
15 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
16 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
17 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
18 chr1:179265400-179287600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr1:179266400-179286400 Weak transcription Fetal Kidney kidney
20 chr1:179266400-179322800 Weak transcription Small Intestine intestine
21 chr1:179267800-179287000 Weak transcription Spleen Spleen
22 chr1:179268400-179278200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:179268400-179280200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
25 chr1:179269600-179280000 Weak transcription Thymus Thymus
26 chr1:179270200-179283200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:179270400-179277600 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr1:179271000-179279000 Strong transcription Primary monocytes fromperipheralblood blood
29 chr1:179271200-179277600 Strong transcription Liver Liver
30 chr1:179271400-179287600 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:179271600-179278200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr1:179271600-179283800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr1:179271600-179286400 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr1:179271800-179277400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:179271800-179280200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr1:179271800-179287600 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr1:179272000-179284400 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:179272000-179286000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr1:179272600-179288200 Weak transcription Stomach Mucosa stomach
40 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
41 chr1:179273000-179281400 Weak transcription Adipose Nuclei Adipose
42 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr1:179273200-179277400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:179273200-179290400 Weak transcription Pancreatic Islets Pancreatic Islet
45 chr1:179273200-179294600 Weak transcription Placenta Placenta
46 chr1:179273400-179277600 Strong transcription Fetal Stomach stomach
47 chr1:179273400-179287000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr1:179273800-179293400 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:179274400-179281200 Weak transcription Primary hematopoietic stem cells blood
50 chr1:179274400-179289400 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015