Variant report

Variant	rs7555710
Chromosome Location	chr1:227091079-227091080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227088122..227093330-chr1:227093838..227098256,5	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57318085	1.00[AFR][1000 genomes]
rs7536451	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003656	chr1:227034700-227559665	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv535318	chr1:227034700-227559665	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227059800-227095000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:227069400-227102800	Weak transcription	K562	blood
3	chr1:227071200-227091400	Weak transcription	Osteobl	bone
4	chr1:227071800-227102400	Weak transcription	Small Intestine	intestine
5	chr1:227072200-227091800	Weak transcription	Fetal Kidney	kidney
6	chr1:227072200-227100400	Weak transcription	Stomach Mucosa	stomach
7	chr1:227073400-227092200	Strong transcription	Pancreas	Pancrea
8	chr1:227073800-227100600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:227074200-227091800	Weak transcription	Fetal Heart	heart
10	chr1:227075200-227091800	Weak transcription	Right Atrium	heart
11	chr1:227078600-227091600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:227079800-227097200	Weak transcription	Brain Germinal Matrix	brain
13	chr1:227080000-227094800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:227080800-227093600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:227082800-227110600	Weak transcription	Fetal Brain Female	brain
16	chr1:227083000-227092000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:227083200-227091400	Weak transcription	Colonic Mucosa	Colon
18	chr1:227083200-227099400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:227083200-227126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:227083800-227097200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr1:227083800-227097400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:227084000-227093400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:227084200-227091400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:227084800-227096800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:227085600-227093200	Weak transcription	Fetal Intestine Large	intestine
26	chr1:227086400-227091400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:227087600-227092200	Weak transcription	GM12878-XiMat	blood
28	chr1:227087800-227091200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:227087800-227096400	Weak transcription	Placenta	Placenta
30	chr1:227088000-227091400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:227088000-227095000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:227088200-227091600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:227088200-227091800	Weak transcription	Esophagus	oesophagus
34	chr1:227088200-227091800	Weak transcription	Ovary	ovary
35	chr1:227088200-227093400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr1:227088200-227108200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:227088200-227109200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr1:227088400-227091600	Weak transcription	Left Ventricle	heart
39	chr1:227088400-227092000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:227088400-227096000	Weak transcription	Aorta	Aorta
41	chr1:227088400-227097000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr1:227088400-227109000	Weak transcription	Psoas Muscle	Psoas
43	chr1:227088400-227111600	Weak transcription	Spleen	Spleen
44	chr1:227088600-227091200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:227088600-227091400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:227088600-227091600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:227088600-227091800	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:227088600-227091800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:227088600-227092000	Weak transcription	Duodenum Mucosa	Duodenum
50	chr1:227088600-227097000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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