Variant report

Variant	rs7555945
Chromosome Location	chr1:171164039-171164040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171161907..171164775-chr1:171168366..171171218,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28369909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28745274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7549095	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	esv10193	chr1:171128845-171414611	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171156400-171165800	Weak transcription	Gastric	stomach
2	chr1:171156600-171169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:171156600-171177200	Weak transcription	Esophagus	oesophagus
4	chr1:171156600-171179600	Weak transcription	NHLF	lung
5	chr1:171156800-171179600	Weak transcription	Right Ventricle	heart
6	chr1:171157800-171165600	Weak transcription	Ovary	ovary
7	chr1:171158200-171167000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr1:171158400-171165600	Weak transcription	Fetal Lung	lung
9	chr1:171159000-171165800	Weak transcription	Lung	lung
10	chr1:171160000-171164800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:171160000-171165000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:171160200-171166800	Weak transcription	Fetal Brain Male	brain
13	chr1:171161000-171165800	Weak transcription	Aorta	Aorta
14	chr1:171161000-171171800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:171161200-171165000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:171161800-171164200	Weak transcription	Liver	Liver
17	chr1:171161800-171165000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:171162600-171165800	Weak transcription	Right Atrium	heart
19	chr1:171163000-171167400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:171163400-171164200	Weak transcription	Stomach Mucosa	stomach
21	chr1:171163600-171166600	Genic enhancers	Adipose Nuclei	Adipose
22	chr1:171163600-171167200	Enhancers	Fetal Intestine Large	intestine
23	chr1:171163800-171165200	Enhancers	Small Intestine	intestine
24	chr1:171163800-171165600	Weak transcription	Psoas Muscle	Psoas
25	chr1:171164000-171165600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links