Variant report

Variant	rs7556859
Chromosome Location	chr2:36608602-36608603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36608117..36609788-chr2:36637029..36638848,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12712499	0.82[ASN][1000 genomes]
rs2161903	0.89[ASN][1000 genomes]
rs3770949	0.80[ASN][1000 genomes]
rs67501694	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36599400-36609600	Enhancers	HMEC	breast
3	chr2:36600000-36609000	Genic enhancers	HSMM	muscle
4	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
5	chr2:36600600-36608800	Genic enhancers	Muscle Satellite Cultured Cells	--
6	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
7	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
8	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:36604400-36609400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
12	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:36604400-36616400	Weak transcription	Gastric	stomach
16	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
17	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:36604800-36608800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:36604800-36609400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:36605400-36609200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:36605400-36610000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:36606000-36608800	Genic enhancers	NH-A	brain
28	chr2:36606400-36608800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:36606600-36609000	Genic enhancers	Placenta	Placenta
30	chr2:36606600-36609000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr2:36606600-36609200	Enhancers	Colonic Mucosa	Colon
32	chr2:36606600-36609400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr2:36606600-36609600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:36606600-36609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:36606600-36610000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr2:36606800-36609400	Enhancers	Fetal Intestine Large	intestine
37	chr2:36607000-36608800	Enhancers	Duodenum Mucosa	Duodenum
38	chr2:36607000-36609000	Transcr. at gene 5' and 3'	A549	lung
39	chr2:36607000-36609200	Enhancers	Fetal Heart	heart
40	chr2:36607000-36611600	Genic enhancers	NHLF	lung
41	chr2:36607200-36608800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr2:36607200-36608800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
43	chr2:36607200-36609200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:36607200-36609200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr2:36607200-36609200	Enhancers	Spleen	Spleen
46	chr2:36607200-36609400	Genic enhancers	Fetal Intestine Small	intestine
47	chr2:36607200-36609600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr2:36607200-36609800	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr2:36607200-36610000	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr2:36607200-36610000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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