Variant report

Variant	rs7558191
Chromosome Location	chr2:213468813-213468814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11890705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11890828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11900459	1.00[EUR][1000 genomes]
rs16848963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16849012	1.00[EUR][1000 genomes]
rs16849014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56872909	1.00[EUR][1000 genomes]
rs57284153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59672960	1.00[EUR][1000 genomes]
rs60939515	1.00[EUR][1000 genomes]
rs7601573	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7605740	1.00[ASW][hapmap]
rs7608382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948878	chr2:213345197-213534298	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3459104	chr2:213465833-213470603	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3459102	chr2:213465857-213470603	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3459103	chr2:213465897-213470559	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3459105	chr2:213465897-213470559	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv524959	chr2:213468813-213472634	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3692759	chr2:213468813-213473115	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213462600-213483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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