Variant report

Variant	rs7558402
Chromosome Location	chr2:114694830-114694831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:114689565..114692080-chr2:114692930..114695459,2	K562	blood:
2	chr2:114685102..114687556-chr2:114692653..114695643,2	K562	blood:

Variant related genes	Relation type
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12711793	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2419081	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs901466	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7558402	ACTR3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
5	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
6	chr2:114668200-114704800	Weak transcription	Gastric	stomach
7	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
8	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
9	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
11	chr2:114670800-114719000	Strong transcription	Dnd41	blood
12	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
19	chr2:114676200-114696200	Weak transcription	Pancreas	Pancrea
20	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
21	chr2:114676600-114695000	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:114676600-114695800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr2:114681400-114695000	Strong transcription	Liver	Liver
27	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:114681600-114719400	Strong transcription	NH-A	brain
29	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr2:114682600-114723400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:114682600-114725000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr2:114683000-114715800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr2:114683200-114695200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr2:114683400-114695000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:114683400-114696000	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr2:114683400-114719800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:114683400-114720000	Strong transcription	NHDF-Ad	bronchial
38	chr2:114683600-114696000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr2:114684200-114695000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr2:114684400-114696000	Weak transcription	Lung	lung
41	chr2:114684800-114697600	Weak transcription	Colonic Mucosa	Colon
42	chr2:114687000-114718200	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr2:114687200-114695000	Weak transcription	Brain Anterior Caudate	brain
44	chr2:114687200-114698400	Weak transcription	Brain Angular Gyrus	brain
45	chr2:114687400-114719400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:114687600-114696000	Weak transcription	Right Ventricle	heart
47	chr2:114687600-114704800	Weak transcription	Aorta	Aorta
48	chr2:114687600-114704800	Weak transcription	Fetal Stomach	stomach
49	chr2:114687800-114696000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr2:114688200-114715200	Strong transcription	HUES6 Cell Line	embryonic stem cell

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