Variant report

Variant	rs7560397
Chromosome Location	chr2:31356635-31356636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17010832	0.84[YRI][hapmap]
rs56104208	0.98[AFR][1000 genomes]
rs56116538	0.98[AFR][1000 genomes]
rs6741792	0.91[YRI][hapmap]
rs73921508	0.98[AFR][1000 genomes]
rs73921509	0.98[AFR][1000 genomes]
rs7604882	0.94[AFR][1000 genomes]
rs7608241	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31347800-31358800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:31349800-31357200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:31350000-31359600	Weak transcription	Pancreas	Pancrea
4	chr2:31351600-31358600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr2:31351600-31359600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:31353400-31358600	Enhancers	Brain Germinal Matrix	brain
7	chr2:31353400-31359600	Weak transcription	Spleen	Spleen
8	chr2:31354400-31356800	Enhancers	NHEK	skin
9	chr2:31354600-31356800	Weak transcription	Fetal Brain Male	brain
10	chr2:31355400-31357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:31355600-31357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:31355600-31358600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:31355800-31358800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:31355800-31359200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:31356000-31357400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:31356000-31357400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:31356000-31358600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:31356000-31359200	Weak transcription	HMEC	breast
19	chr2:31356200-31358800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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