Variant report

Variant	rs7560826
Chromosome Location	chr2:209977400-209977401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10181135	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10199040	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10210976	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1079125	0.85[EUR][1000 genomes]
rs12328454	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13386937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13390472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391253	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1371436	0.85[EUR][1000 genomes]
rs17727631	0.85[EUR][1000 genomes]
rs1821984	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28470777	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28628863	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72994590	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7578250	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012184	chr2:209755847-210049331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536131	chr2:209755847-210049331	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009924	chr2:209805661-210042572	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1002578	chr2:209836205-210026339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv536132	chr2:209836205-210026339	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv875761	chr2:209912108-210222004	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv584307	chr2:209966941-210024938	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209975400-209978200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:209975400-209978600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr2:209975600-209978400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:209975800-209978200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:209976000-209978200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:209976400-209977400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:209976400-209977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:209977000-209977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:209977200-209977600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:209977200-209978000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:209977200-209981200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:209977400-209978200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr2:209977400-209978200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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