Variant report

Variant	rs7561035
Chromosome Location	chr2:34414583-34414584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10177000	0.91[EUR][1000 genomes]
rs11888679	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11894504	0.86[EUR][1000 genomes]
rs11894626	0.86[EUR][1000 genomes]
rs11894639	0.86[EUR][1000 genomes]
rs11895050	0.91[EUR][1000 genomes]
rs11900172	0.86[EUR][1000 genomes]
rs11900277	0.86[EUR][1000 genomes]
rs17014886	0.82[EUR][1000 genomes]
rs4462767	0.86[EUR][1000 genomes]
rs4484013	0.86[EUR][1000 genomes]
rs4505502	0.86[EUR][1000 genomes]
rs4556955	0.86[EUR][1000 genomes]
rs55939505	0.86[EUR][1000 genomes]
rs72781114	0.82[EUR][1000 genomes]
rs72781162	0.82[EUR][1000 genomes]
rs72782916	0.86[EUR][1000 genomes]
rs72782919	0.86[EUR][1000 genomes]
rs72782920	0.86[EUR][1000 genomes]
rs72782922	0.86[EUR][1000 genomes]
rs72782926	0.86[EUR][1000 genomes]
rs72782928	0.86[EUR][1000 genomes]
rs72782931	0.84[EUR][1000 genomes]
rs72782938	0.86[EUR][1000 genomes]
rs72782939	0.86[EUR][1000 genomes]
rs72782940	0.84[EUR][1000 genomes]
rs72782942	0.86[EUR][1000 genomes]
rs72782943	0.86[EUR][1000 genomes]
rs72782944	0.86[EUR][1000 genomes]
rs72782945	0.86[EUR][1000 genomes]
rs72782947	0.86[EUR][1000 genomes]
rs72782951	0.86[EUR][1000 genomes]
rs72782952	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72782954	0.86[EUR][1000 genomes]
rs72782956	0.86[EUR][1000 genomes]
rs72782958	0.86[EUR][1000 genomes]
rs72782959	0.86[EUR][1000 genomes]
rs72782961	0.86[EUR][1000 genomes]
rs72782963	0.86[EUR][1000 genomes]
rs72782964	0.86[EUR][1000 genomes]
rs72782965	0.86[EUR][1000 genomes]
rs72782966	0.86[EUR][1000 genomes]
rs72782971	0.86[EUR][1000 genomes]
rs72782972	0.86[EUR][1000 genomes]
rs72782974	0.86[EUR][1000 genomes]
rs72782975	0.86[EUR][1000 genomes]
rs72782978	0.80[EUR][1000 genomes]
rs72782982	0.86[EUR][1000 genomes]
rs741556	0.84[EUR][1000 genomes]
rs741557	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006001	chr2:33991364-34858721	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv535628	chr2:33991364-34858721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv873799	chr2:33996983-34821990	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv999091	chr2:34154486-34993188	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv535629	chr2:34154486-34993188	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv873808	chr2:34275757-34703057	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1012401	chr2:34302403-34468097	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv833714	chr2:34348193-34504892	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:34413400-34414600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:34413800-34414600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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