Variant report

Variant	rs75622655
Chromosome Location	chr10:97054701-97054702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97054284-97055833	GM12891	blood:	n/a	n/a
2	RELA	chr10:97054637-97055554	GM10847	blood:	n/a	n/a
3	SP1	chr10:97054621-97055422	GM12878	blood:	n/a	n/a
4	MTA3	chr10:97054225-97055902	GM12878	blood:	n/a	n/a
5	NFIC	chr10:97054408-97055956	GM12878	blood:	n/a	n/a
6	POLR2A	chr10:97054662-97055226	HUVEC	blood vessel:	n/a	n/a
7	CREB1	chr10:97054667-97055621	GM12878	blood:	n/a	n/a
8	PAX5	chr10:97054508-97055609	GM12878	blood:	n/a	n/a
9	POLR2A	chr10:97054625-97055804	GM12878	blood:	n/a	n/a
10	POLR2A	chr10:97054346-97055856	GM12891	blood:	n/a	n/a
11	ELK1	chr10:97054680-97055450	GM12878	blood:	n/a	n/a
12	NFATC1	chr10:97054446-97055522	GM12878	blood:	n/a	n/a
13	RCOR1	chr10:97054604-97055668	GM12878	blood:	n/a	n/a
14	NFIC	chr10:97054677-97055745	GM12878	blood:	n/a	n/a
15	EP300	chr10:97054599-97055493	GM12878	blood:	n/a	chr10:97055384-97055400
16	RUNX3	chr10:97054539-97055542	GM12878	blood:	n/a	n/a
17	FOXM1	chr10:97054223-97055829	GM12878	blood:	n/a	n/a
18	IRF1	chr10:97054646-97055379	K562	blood:	n/a	chr10:97055255-97055268 chr10:97055255-97055269 chr10:97055258-97055268 chr10:97055255-97055269 chr10:97055253-97055267 chr10:97055254-97055268
19	BCL3	chr10:97054696-97055391	GM12878	blood:	n/a	n/a
20	RUNX3	chr10:97054317-97055566	GM12878	blood:	n/a	n/a
21	EP300	chr10:97054651-97055392	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:97054615-97055747	GM18951	blood:	n/a	n/a
23	POLR2A	chr10:97054369-97055771	GM19099	blood:	n/a	n/a
24	TAF1	chr10:97054608-97055382	GM12891	blood:	n/a	n/a
25	POLR2A	chr10:97054404-97055764	GM12878	blood:	n/a	n/a
26	ATF2	chr10:97054583-97055465	GM12878	blood:	n/a	n/a
27	TBP	chr10:97054628-97055409	GM12878	blood:	n/a	n/a
28	POLR2A	chr10:97054385-97055786	GM18505	blood:	n/a	n/a
29	POU2F2	chr10:97054614-97055450	GM12891	blood:	n/a	n/a
30	POLR2A	chr10:97054587-97055706	GM15510	blood:	n/a	n/a
31	PML	chr10:97054310-97055573	GM12878	blood:	n/a	n/a
32	STAT5A	chr10:97054461-97055846	GM12878	blood:	n/a	chr10:97054897-97054906 chr10:97054896-97054905 chr10:97055256-97055267
33	POLR2A	chr10:97054339-97055712	GM12891	blood:	n/a	n/a
34	EBF1	chr10:97054597-97055297	GM12878	blood:	n/a	n/a
35	BCLAF1	chr10:97054286-97055575	GM12878	blood:	n/a	n/a
36	CTCF	chr10:97054700-97054850	SAEC	small airway:	n/a	n/a
37	POLR2A	chr10:97054235-97055878	GM12878	blood:	n/a	n/a
38	POLR2A	chr10:97054112-97055912	GM12892	blood:	n/a	n/a
39	SP1	chr10:97054573-97055453	GM12878	blood:	n/a	n/a
40	YY1	chr10:97054621-97055518	GM12878	blood:	n/a	n/a
41	POLR2A	chr10:97054667-97055757	GM12878	blood:	n/a	n/a
42	POLR2A	chr10:97054198-97056364	GM12878	blood:	n/a	n/a
43	POU2F2	chr10:97054531-97055771	GM12878	blood:	n/a	n/a
44	FOXM1	chr10:97054595-97055834	GM12878	blood:	n/a	n/a
45	MAX	chr10:97054694-97055435	K562	blood:	n/a	chr10:97055360-97055369
46	SPI1	chr10:97054635-97054856	GM12891	blood:	n/a	n/a
47	RELA	chr10:97054607-97055452	GM19099	blood:	n/a	n/a
48	ELF1	chr10:97054624-97055298	K562	blood:	n/a	n/a
49	EBF1	chr10:97054626-97055563	GM12878	blood:	n/a	n/a
50	ELF1	chr10:97054655-97055621	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:97051927..97054727-chr10:97113861..97115578,2	K562	blood:
2	chr10:97053251..97055097-chr10:97056727..97058389,2	K562	blood:
3	chr10:97049651..97052657-chr10:97053278..97056357,3	MCF-7	breast:
4	chr10:97054091..97056343-chr10:97062077..97064550,2	K562	blood:
5	chr10:97038835..97040878-chr10:97054289..97056491,2	K562	blood:
6	chr10:96975681..96977490-chr10:97052151..97054934,2	K562	blood:
7	chr10:97047325..97053107-chr10:97053232..97056483,6	MCF-7	breast:

Variant related genes	Relation type
PDLIM1	TF binding region
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97051200-97054800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:97051200-97054800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:97051200-97054800	Weak transcription	HSMM	muscle
4	chr10:97051200-97055000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:97051200-97056800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:97051600-97055000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:97053200-97054800	Enhancers	Fetal Intestine Large	intestine
8	chr10:97053600-97054800	Enhancers	Primary B cells from cord blood	blood
9	chr10:97054200-97054800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:97054200-97054800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:97054200-97054800	Enhancers	Fetal Intestine Small	intestine
12	chr10:97054200-97054800	Enhancers	Fetal Thymus	thymus
13	chr10:97054200-97054800	Enhancers	HMEC	breast
14	chr10:97054400-97054800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr10:97054400-97054800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr10:97054400-97054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:97054400-97054800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:97054400-97054800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr10:97054400-97054800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:97054400-97054800	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:97054400-97054800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:97054400-97054800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:97054400-97054800	Enhancers	Fetal Kidney	kidney
24	chr10:97054400-97054800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:97054400-97054800	Enhancers	A549	lung
26	chr10:97054400-97054800	Enhancers	NHLF	lung
27	chr10:97054400-97054800	Enhancers	Osteobl	bone
28	chr10:97054400-97055000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:97054400-97055000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr10:97054400-97055000	Bivalent Enhancer	Fetal Lung	lung
31	chr10:97054400-97055000	Enhancers	Placenta	Placenta
32	chr10:97054400-97055000	Enhancers	Stomach Mucosa	stomach
33	chr10:97054400-97055200	Enhancers	Primary hematopoietic stem cells	blood
34	chr10:97054400-97055200	Enhancers	HepG2	liver
35	chr10:97054400-97055600	Flanking Active TSS	K562	blood
36	chr10:97054400-97056400	Flanking Active TSS	GM12878-XiMat	blood
37	chr10:97054600-97054800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
38	chr10:97054600-97054800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
39	chr10:97054600-97054800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr10:97054600-97054800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:97054600-97054800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:97054600-97054800	Enhancers	Primary T cells from cord blood	blood
43	chr10:97054600-97054800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
44	chr10:97054600-97054800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:97054600-97054800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:97054600-97054800	Enhancers	Adipose Nuclei	Adipose
47	chr10:97054600-97054800	Enhancers	Aorta	Aorta
48	chr10:97054600-97054800	Enhancers	Colon Smooth Muscle	Colon
49	chr10:97054600-97054800	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr10:97054600-97054800	Enhancers	Esophagus	oesophagus

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