Variant report

Variant	rs7564130
Chromosome Location	chr2:50606642-50606643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10191436	0.82[CEU][hapmap]
rs11125300	0.82[CEU][hapmap]
rs11125301	0.82[CEU][hapmap]
rs12465806	0.82[CEU][hapmap]
rs12475464	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12622261	0.82[CEU][hapmap]
rs13005521	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13394447	0.85[CEU][hapmap]
rs1402122	0.82[CEU][hapmap]
rs1402126	0.82[CEU][hapmap]
rs1402128	0.92[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs1402129	0.82[CEU][hapmap]
rs1520450	0.85[CEU][hapmap]
rs1520453	0.82[CEU][hapmap]
rs1818713	0.82[CEU][hapmap]
rs1829534	0.85[CEU][hapmap]
rs1915174	0.82[CEU][hapmap]
rs1949569	0.82[CEU][hapmap]
rs2037387	0.82[CEU][hapmap]
rs4318425	0.85[CEU][hapmap]
rs4377361	0.82[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs4971669	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7559624	0.85[CEU][hapmap]
rs7560724	0.82[JPT][hapmap]
rs7574552	0.82[CEU][hapmap]
rs7577661	0.82[CEU][hapmap]
rs7581097	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv492164	chr2:50399251-51029090	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1000653	chr2:50417660-51083470	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535693	chr2:50417660-51083470	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv948548	chr2:50569117-50695100	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50606200-50606800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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