Variant report

Variant	rs7565020
Chromosome Location	chr2:66917717-66917718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12473446	0.84[EUR][1000 genomes]
rs12994238	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66912000-66918200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:66914000-66918000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:66914200-66918000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:66914200-66918200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:66914200-66918400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:66914400-66918000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:66914400-66918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:66914400-66918200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:66915600-66918000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:66916600-66917800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:66916800-66917800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:66916800-66918400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr2:66917000-66922600	Active TSS	Colon Smooth Muscle	Colon
14	chr2:66917400-66918400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:66917400-66920800	Active TSS	Stomach Smooth Muscle	stomach
16	chr2:66917600-66918000	Enhancers	Fetal Lung	lung
17	chr2:66917600-66918200	Weak transcription	Fetal Stomach	stomach
18	chr2:66917600-66918600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:66917600-66920600	Active TSS	Fetal Kidney	kidney
20	chr2:66917600-66921400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:66917600-66921600	Active TSS	Rectal Smooth Muscle	rectum
22	chr2:66917600-66922400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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