Variant report

Variant	rs7565507
Chromosome Location	chr2:39767074-39767075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11124685	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs11124686	0.82[ASN][1000 genomes]
rs1526024	0.81[ASN][1000 genomes]
rs2888602	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs4670285	0.82[GIH][hapmap]
rs6741839	0.81[ASN][1000 genomes]
rs6753798	0.83[CHB][hapmap];0.80[CHD][hapmap];0.83[JPT][hapmap]
rs714855	0.90[ASN][1000 genomes]
rs7588713	0.82[EUR][1000 genomes]
rs7591326	0.83[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39753400-39768400	Weak transcription	Right Ventricle	heart
2	chr2:39753400-39768600	Weak transcription	Right Atrium	heart
3	chr2:39758200-39767400	Weak transcription	Fetal Kidney	kidney
4	chr2:39761200-39768200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:39761800-39769800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:39761800-39777600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:39762200-39785000	Weak transcription	HSMMtube	muscle
8	chr2:39763000-39769400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:39763000-39773600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:39763600-39768400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr2:39765400-39767600	Weak transcription	Aorta	Aorta
12	chr2:39765600-39768200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:39766200-39770000	Enhancers	Left Ventricle	heart
14	chr2:39766800-39767200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr2:39766800-39767600	Enhancers	HepG2	liver
16	chr2:39767000-39767200	Enhancers	Lung	lung
17	chr2:39767000-39767600	Enhancers	Psoas Muscle	Psoas
18	chr2:39767000-39769000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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