Variant report

Variant	rs7566083
Chromosome Location	chr2:100406795-100406796
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10175788	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10182690	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10191077	0.80[EUR][1000 genomes]
rs10194527	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10198310	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10199548	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10204617	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10496340	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10865032	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10865033	0.80[EUR][1000 genomes]
rs10865034	0.80[EUR][1000 genomes]
rs11123796	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12478013	0.80[EUR][1000 genomes]
rs12712060	0.89[ASN][1000 genomes]
rs13428668	0.84[EUR][1000 genomes]
rs1344701	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1344702	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1366761	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1366763	0.83[ASN][1000 genomes]
rs1366766	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1404176	0.83[EUR][1000 genomes]
rs1429268	0.86[ASN][1000 genomes]
rs1429269	0.86[ASN][1000 genomes]
rs1568786	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1594111	0.83[ASN][1000 genomes]
rs1594113	0.83[ASN][1000 genomes]
rs1608640	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2091150	0.96[EUR][1000 genomes]
rs2115600	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2115601	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2163044	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2309650	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2871310	0.83[ASN][1000 genomes]
rs3863006	0.83[EUR][1000 genomes]
rs4286327	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4481043	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4521099	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4850916	0.80[EUR][1000 genomes]
rs4851229	0.84[EUR][1000 genomes]
rs4851231	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4851232	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4851234	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4851235	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62147565	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6542890	0.84[EUR][1000 genomes]
rs6542900	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6542901	0.86[ASN][1000 genomes]
rs6542902	0.80[EUR][1000 genomes]
rs6705966	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6721652	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6723474	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6725716	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6732358	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6743473	0.80[EUR][1000 genomes]
rs6744510	0.84[EUR][1000 genomes]
rs6747845	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6756821	0.96[EUR][1000 genomes]
rs7560078	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7562121	0.94[ASN][1000 genomes]
rs7565155	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7573572	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7586604	0.80[EUR][1000 genomes]
rs7596023	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7604536	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9308829	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9967704	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1010971	chr2:100387986-100431935	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100396200-100407600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:100396200-100409200	Strong transcription	Primary B cells from cord blood	blood
3	chr2:100397400-100409800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr2:100397800-100411400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:100399400-100412800	Weak transcription	Dnd41	blood
6	chr2:100402000-100407200	Weak transcription	Liver	Liver
7	chr2:100404200-100411000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:100404600-100406800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:100404800-100410200	Weak transcription	Primary T cells from cord blood	blood
10	chr2:100405000-100411600	Weak transcription	Fetal Brain Male	brain
11	chr2:100405600-100409400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:100406000-100407600	Enhancers	Fetal Heart	heart
13	chr2:100406400-100407000	Enhancers	Fetal Lung	lung
14	chr2:100406600-100407200	Enhancers	Colon Smooth Muscle	Colon
15	chr2:100406600-100409400	Weak transcription	Primary monocytes fromperipheralblood	blood

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