Variant report

Variant	rs7567094
Chromosome Location	chr2:11787239-11787240
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:11787150..11791482-chr2:11795324..11799868,6	MCF-7	breast:
2	chr2:11619575..11623223-chr2:11785570..11788850,5	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7557851	0.81[ASN][1000 genomes]
rs7564647	0.86[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11724400-11788600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:11767600-11788600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:11773400-11790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:11779200-11788200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11780200-11791400	Weak transcription	Brain Substantia Nigra	brain
6	chr2:11780400-11789000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:11780600-11807200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:11780800-11788600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:11780800-11788800	Weak transcription	Gastric	stomach
10	chr2:11780800-11792000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:11781200-11790600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:11783600-11788600	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:11783600-11800000	Weak transcription	Brain Anterior Caudate	brain
14	chr2:11783800-11788600	Weak transcription	Pancreas	Pancrea
15	chr2:11783800-11791800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:11783800-11797400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr2:11784000-11787600	Weak transcription	HepG2	liver
18	chr2:11784000-11788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr2:11784200-11793000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:11784200-11793000	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:11784400-11796800	Weak transcription	Ovary	ovary
22	chr2:11784800-11788000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:11785000-11792800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:11786000-11790000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:11787000-11790400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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