Variant report

Variant	rs7569201
Chromosome Location	chr2:189739928-189739929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12185550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13012958	1.00[ASN][1000 genomes]
rs1516439	1.00[ASN][1000 genomes]
rs1516448	1.00[ASN][1000 genomes]
rs1516449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1516453	1.00[ASN][1000 genomes]
rs17355123	0.83[EUR][1000 genomes]
rs17355585	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17760712	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs17760857	0.90[EUR][1000 genomes]
rs1850274	1.00[ASN][1000 genomes]
rs2203600	1.00[ASN][1000 genomes]
rs2351099	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2675395	1.00[ASN][1000 genomes]
rs2675399	1.00[ASN][1000 genomes]
rs2675400	1.00[ASN][1000 genomes]
rs2675401	1.00[ASN][1000 genomes]
rs2675404	1.00[ASN][1000 genomes]
rs2675405	1.00[ASN][1000 genomes]
rs2708209	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56241568	0.90[EUR][1000 genomes]
rs72904656	0.83[EUR][1000 genomes]
rs72904657	0.83[EUR][1000 genomes]
rs781276	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv4236	chr2:189730546-189740139	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv821858	chr2:189733808-189740029	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189735200-189740000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:189737200-189743200	Weak transcription	Fetal Lung	lung
3	chr2:189739000-189755600	Weak transcription	Aorta	Aorta

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