Variant report

Variant	rs7570372
Chromosome Location	chr2:209123084-209123085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6713613	1.00[AMR][1000 genomes]
rs6732068	1.00[AMR][1000 genomes]
rs6742767	1.00[AMR][1000 genomes]
rs6760238	1.00[AMR][1000 genomes]
rs73983682	1.00[AMR][1000 genomes]
rs7578972	1.00[AMR][1000 genomes]
rs7592705	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv834517	chr2:209006797-209170269	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209120400-209123200	Enhancers	Fetal Heart	heart
2	chr2:209120800-209129800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:209121200-209129600	Weak transcription	Left Ventricle	heart
4	chr2:209122000-209123200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:209122000-209123200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:209122200-209129600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:209122400-209129600	Weak transcription	Brain Substantia Nigra	brain
8	chr2:209122600-209129400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:209122600-209129600	Weak transcription	Brain Angular Gyrus	brain
10	chr2:209122800-209123200	Enhancers	HepG2	liver
11	chr2:209122800-209129600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:209122800-209129600	Weak transcription	Fetal Intestine Small	intestine
13	chr2:209122800-209129600	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links