Variant report

Variant	rs7570461
Chromosome Location	chr2:168609676-168609677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168608803..168611110-chr2:168612210..168614300,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12613919	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35366312	0.84[ASN][1000 genomes]
rs73971246	0.97[ASN][1000 genomes]
rs73971255	0.93[ASN][1000 genomes]
rs73971275	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005875	chr2:168481626-168628276	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536032	chr2:168481626-168628276	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2757840	chr2:168489369-168640310	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2759100	chr2:168489369-168640310	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv459940	chr2:168552363-168628177	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv583595	chr2:168552363-168628177	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168603800-168613200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:168604000-168610200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:168608200-168610400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:168608200-168610600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:168608400-168610000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:168608800-168610400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr2:168609000-168610200	Enhancers	Psoas Muscle	Psoas
8	chr2:168609000-168611200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:168609200-168609800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:168609200-168610000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:168609200-168610000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr2:168609200-168610200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:168609200-168610200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr2:168609200-168610400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:168609200-168610400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:168609200-168610400	Enhancers	H9 Cell Line	embryonic stem cell
17	chr2:168609200-168610400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:168609200-168610400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:168609200-168610400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:168609200-168610400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr2:168609200-168610800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:168609400-168609800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr2:168609400-168610000	Enhancers	Fetal Thymus	thymus
24	chr2:168609400-168610400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:168609400-168610600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:168609600-168610400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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