Variant report

Variant	rs75721230
Chromosome Location	chr19:38506558-38506559
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv911656	chr19:38505037-38539988	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38474800-38513600	Weak transcription	Gastric	stomach
2	chr19:38495400-38522800	Weak transcription	Aorta	Aorta
3	chr19:38495400-38526400	Weak transcription	Ovary	ovary
4	chr19:38495600-38509200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr19:38495600-38512800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr19:38495600-38513400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr19:38495600-38514200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr19:38495800-38510000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr19:38495800-38513400	Weak transcription	Stomach Mucosa	stomach
10	chr19:38496200-38508000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr19:38496200-38508200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr19:38496200-38509400	Weak transcription	HSMMtube	muscle
13	chr19:38496200-38512600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:38496200-38513600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:38496200-38513600	Weak transcription	Left Ventricle	heart
16	chr19:38496200-38513600	Weak transcription	Right Ventricle	heart
17	chr19:38496200-38513600	Weak transcription	NHEK	skin
18	chr19:38496200-38521400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr19:38496400-38510800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:38496400-38511000	Weak transcription	Brain Germinal Matrix	brain
21	chr19:38496400-38521400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr19:38496600-38513600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr19:38496600-38515600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr19:38496800-38506600	Weak transcription	Osteobl	bone
25	chr19:38496800-38509400	Weak transcription	HUVEC	blood vessel
26	chr19:38496800-38520600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:38497000-38513400	Weak transcription	NHLF	lung
28	chr19:38497400-38511800	Weak transcription	NH-A	brain
29	chr19:38497400-38515800	Weak transcription	Fetal Brain Male	brain
30	chr19:38497400-38520600	Weak transcription	Primary T cells from cord blood	blood
31	chr19:38497600-38513600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr19:38498200-38514800	Weak transcription	HepG2	liver
33	chr19:38500600-38524200	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr19:38501000-38521400	Weak transcription	Thymus	Thymus
35	chr19:38501400-38507400	Strong transcription	GM12878-XiMat	blood
36	chr19:38501800-38511000	Weak transcription	HSMM	muscle
37	chr19:38502400-38523000	Weak transcription	Liver	Liver
38	chr19:38502600-38512600	Weak transcription	Pancreas	Pancrea
39	chr19:38503000-38506800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr19:38503000-38511000	Weak transcription	Spleen	Spleen
41	chr19:38503600-38513600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:38503800-38507400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr19:38503800-38508200	Strong transcription	A549	lung
44	chr19:38503800-38509800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr19:38503800-38509800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr19:38503800-38509800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr19:38503800-38509800	Weak transcription	Lung	lung
48	chr19:38503800-38511000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr19:38503800-38511600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:38503800-38513400	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links