Variant report

Variant	rs75727580
Chromosome Location	chr10:93170547-93170548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:
2	chr10:93168131..93170607-chr10:93391298..93393665,3	MCF-7	breast:
3	chr10:93169232..93170758-chr10:93223754..93225469,2	MCF-7	breast:
4	chr10:93170094..93170949-chr12:49110549..49111245,2	Hela-S3	cervix:
5	chr10:93168839..93171584-chr10:93557037..93559095,2	K562	blood:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction
ENSG00000129315	Chromatin interaction
ENSG00000119938	Chromatin interaction
ENSG00000271385	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv3341572	chr10:93168997-93171545	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	esv3438487	chr10:93169572-93170820	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93168200-93170600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:93168400-93170800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:93168600-93171000	Active TSS	Colon Smooth Muscle	Colon
4	chr10:93168600-93171000	Active TSS	Fetal Intestine Large	intestine
5	chr10:93168600-93171200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:93168600-93171400	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:93168600-93171400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:93168600-93171400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:93168600-93171400	Active TSS	A549	lung
10	chr10:93168600-93171600	Active TSS	Fetal Brain Female	brain
11	chr10:93168800-93170600	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:93168800-93170600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr10:93168800-93170600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:93168800-93170600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:93168800-93170600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr10:93168800-93170600	Active TSS	Fetal Muscle Leg	muscle
17	chr10:93168800-93170600	Active TSS	Fetal Thymus	thymus
18	chr10:93168800-93170800	Active TSS	Brain Substantia Nigra	brain
19	chr10:93168800-93170800	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr10:93168800-93170800	Active TSS	Fetal Intestine Small	intestine
21	chr10:93168800-93170800	Active TSS	Rectal Smooth Muscle	rectum
22	chr10:93168800-93171000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr10:93168800-93171000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:93168800-93171000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:93168800-93171000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:93168800-93171000	Active TSS	Duodenum Mucosa	Duodenum
27	chr10:93168800-93171000	ZNF genes & repeats	Fetal Brain Male	brain
28	chr10:93168800-93171000	Active TSS	Placenta	Placenta
29	chr10:93168800-93171000	Active TSS	Left Ventricle	heart
30	chr10:93168800-93171000	Active TSS	Hela-S3	cervix
31	chr10:93168800-93171000	Active TSS	HSMMtube	muscle
32	chr10:93168800-93171200	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr10:93168800-93171200	Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr10:93168800-93171200	Active TSS	Brain Cingulate Gyrus	brain
35	chr10:93168800-93171200	Active TSS	Fetal Lung	lung
36	chr10:93168800-93171200	Active TSS	Right Ventricle	heart
37	chr10:93168800-93171200	Active TSS	NHLF	lung
38	chr10:93168800-93171400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:93168800-93171400	Active TSS	Fetal Stomach	stomach
40	chr10:93168800-93171400	Active TSS	Stomach Smooth Muscle	stomach
41	chr10:93168800-93171600	Active TSS	Psoas Muscle	Psoas
42	chr10:93168800-93171600	Active TSS	K562	blood
43	chr10:93168800-93171800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:93168800-93171800	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr10:93168800-93171800	Active TSS	Brain Hippocampus Middle	brain
46	chr10:93168800-93171800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:93168800-93172000	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:93168800-93172600	Active TSS	Aorta	Aorta
49	chr10:93168800-93172600	Active TSS	Brain Anterior Caudate	brain
50	chr10:93169000-93170600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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