Variant report

Variant	rs7573026
Chromosome Location	chr2:184180275-184180276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:184179313..184181049-chr2:184186553..184189132,2	K562	blood:
2	chr2:184167829..184169684-chr2:184179088..184180846,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11903398	0.94[ASN][1000 genomes]
rs16824254	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16824255	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55899338	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58019122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61138483	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73977884	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73977891	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73980603	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875485	chr2:183827018-184195265	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1014807	chr2:184123737-184181052	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184178600-184181400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:184179600-184181600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:184179800-184181200	Enhancers	HSMM	muscle
4	chr2:184179800-184182200	Enhancers	NHEK	skin
5	chr2:184180000-184181200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:184180000-184181600	Enhancers	NH-A	brain
7	chr2:184180200-184180400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:184180200-184180400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:184180200-184180600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:184180200-184180600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:184180200-184180600	Enhancers	Adipose Nuclei	Adipose
12	chr2:184180200-184180600	Flanking Active TSS	NHDF-Ad	bronchial
13	chr2:184180200-184180600	Enhancers	NHLF	lung
14	chr2:184180200-184180800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:184180200-184180800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr2:184180200-184181000	Flanking Active TSS	HUVEC	blood vessel
17	chr2:184180200-184181400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:184180200-184181400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:184180200-184181400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:184180200-184181400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:184180200-184181400	Enhancers	HMEC	breast
22	chr2:184180200-184181400	Enhancers	HSMMtube	muscle
23	chr2:184180200-184181400	Enhancers	Osteobl	bone

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