Variant report

Variant	rs7573950
Chromosome Location	chr2:113859645-113859646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113856768..113859655-chr2:113862329..113864158,2	K562	blood:
2	chr2:113859222..113863873-chr2:113865698..113870621,4	K562	blood:
3	chr2:113858124..113860722-chr2:113869121..113871284,2	K562	blood:

Variant related genes	Relation type
ENSG00000136689	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1586815	1.00[EUR][1000 genomes]
rs2172189	1.00[EUR][1000 genomes]
rs2248588	1.00[EUR][1000 genomes]
rs2248596	1.00[EUR][1000 genomes]
rs2248600	1.00[EUR][1000 genomes]
rs2248604	1.00[EUR][1000 genomes]
rs28928281	1.00[EUR][1000 genomes]
rs28928283	1.00[EUR][1000 genomes]
rs28928291	1.00[EUR][1000 genomes]
rs28928299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28928300	1.00[EUR][1000 genomes]
rs28928301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28928302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28928303	1.00[AMR][1000 genomes]
rs28928304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28928305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28928306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28929168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3099479	1.00[EUR][1000 genomes]
rs315935	1.00[EUR][1000 genomes]
rs315937	1.00[EUR][1000 genomes]
rs315938	1.00[EUR][1000 genomes]
rs315940	1.00[EUR][1000 genomes]
rs315941	1.00[EUR][1000 genomes]
rs315944	1.00[EUR][1000 genomes]
rs315950	1.00[EUR][1000 genomes]
rs315955	1.00[EUR][1000 genomes]
rs4848315	1.00[EUR][1000 genomes]
rs6735388	1.00[EUR][1000 genomes]
rs6761821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs923692	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1003928	chr2:113846503-113887782	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3323154	chr2:113855481-113859679	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113857200-113861200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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