Variant report

Variant	rs7574280
Chromosome Location	chr2:211991553-211991554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1116467	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11901164	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12614668	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13391698	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13404657	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13413538	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13430611	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1469929	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1816649	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57066439	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66685355	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67284966	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73073631	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv875773	chr2:211973600-212041403	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv460063	chr2:211981894-211996803	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv584311	chr2:211981894-211996803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3358599	chr2:211991114-211991598	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211989000-211991600	Enhancers	Brain Germinal Matrix	brain
2	chr2:211991000-211991800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:211991000-211991800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:211991000-211991800	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links