Variant report

Variant	rs7574693
Chromosome Location	chr2:72461630-72461631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56302716	1.00[AMR][1000 genomes]
rs72835256	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72433200-72466000	Weak transcription	Right Ventricle	heart
2	chr2:72433200-72468600	Weak transcription	Right Atrium	heart
3	chr2:72441000-72462800	Weak transcription	Left Ventricle	heart
4	chr2:72458000-72463200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:72458400-72462800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:72458400-72463200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:72458600-72463400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:72458800-72463200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:72459000-72462800	Weak transcription	Ovary	ovary
10	chr2:72459800-72463600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:72460800-72463200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:72460800-72463200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:72460800-72463400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr2:72461000-72463200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:72461000-72463200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:72461000-72463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:72461000-72463400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:72461200-72462600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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