Variant report

Variant	rs7576403
Chromosome Location	chr2:142492302-142492303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73963575	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7603183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142486400-142494600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:142486400-142501600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:142486600-142494000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:142491400-142494000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:142492000-142493200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:142492000-142493200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr2:142492000-142493600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr2:142492200-142492800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:142492200-142493000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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