Variant report

Variant	rs7576762
Chromosome Location	chr2:74354332-74354333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2280643	0.84[AFR][1000 genomes]
rs2280644	0.86[AFR][1000 genomes]
rs4563249	0.91[AFR][1000 genomes]
rs6731282	1.00[EUR][1000 genomes]
rs72913057	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874285	chr2:74283728-74355244	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv874286	chr2:74323500-74436721	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv3427010	chr2:74351730-74813541	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	140 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74348000-74357400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:74348200-74355000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:74348200-74360400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:74348200-74367600	Weak transcription	Brain Anterior Caudate	brain
5	chr2:74348600-74361800	Weak transcription	Hela-S3	cervix
6	chr2:74348800-74360400	Weak transcription	Primary T cells from cord blood	blood
7	chr2:74350800-74360400	Weak transcription	Brain Substantia Nigra	brain
8	chr2:74351200-74358400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:74353400-74360400	Weak transcription	Dnd41	blood
10	chr2:74353600-74360400	Weak transcription	A549	lung
11	chr2:74353800-74354800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:74354200-74354400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:74354200-74359400	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links