Variant report

Variant	rs7576793
Chromosome Location	chr2:30408483-30408484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12714298	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509577	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34491742	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4264597	0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4577324	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6742857	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv873768	chr2:30403762-30436249	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv438281	chr2:30406902-30418294	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30405000-30409400	Weak transcription	K562	blood
2	chr2:30407800-30408600	Enhancers	Adipose Nuclei	Adipose
3	chr2:30407800-30408800	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr2:30407800-30409000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:30407800-30409000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:30408200-30408600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:30408400-30408600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:30408400-30408600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:30408400-30408800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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