Variant report
Variant | rs7578599 |
---|---|
Chromosome Location | chr2:188143893-188143894 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10174402 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10174460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10203685 | 1.00[AMR][1000 genomes] |
rs10208253 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10221846 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10931287 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13388347 | 1.00[AMR][1000 genomes] |
rs13391909 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13392210 | 0.87[AFR][1000 genomes] |
rs13399503 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13401664 | 1.00[AMR][1000 genomes] |
rs13401762 | 1.00[AMR][1000 genomes] |
rs13405653 | 0.87[AFR][1000 genomes] |
rs13409677 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13414158 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13427655 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13430432 | 0.87[AFR][1000 genomes] |
rs13432027 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28363963 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28458997 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs28585422 | 1.00[AMR][1000 genomes] |
rs6434212 | 1.00[AMR][1000 genomes] |
rs6715996 | 0.87[AFR][1000 genomes] |
rs6721057 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6747392 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6753145 | 0.87[AFR][1000 genomes] |
rs7583999 | 1.00[AMR][1000 genomes] |
rs7589584 | 0.80[AFR][1000 genomes] |
rs7592458 | 0.87[AFR][1000 genomes] |
rs7599181 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949700 | chr2:187713412-188361211 | Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | nsv1003061 | chr2:187950057-188282330 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1000617 | chr2:187950057-188290511 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv2763652 | chr2:188042583-188153257 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv584032 | chr2:188083217-188150228 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv533935 | chr2:188089148-188284766 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv584035 | chr2:188105078-188153421 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv431868 | chr2:188119621-188159750 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:188143800-188144000 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr2:188143800-188144000 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |