Variant report

Variant	rs7579187
Chromosome Location	chr2:100341568-100341569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13402908	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100327800-100344400	Weak transcription	Ovary	ovary
2	chr2:100339000-100345200	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:100339200-100342400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:100339800-100341600	Strong transcription	Primary B cells from cord blood	blood
5	chr2:100340000-100342600	Weak transcription	Fetal Lung	lung
6	chr2:100340600-100344200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:100340600-100344400	Weak transcription	Primary T cells from cord blood	blood
8	chr2:100340600-100344400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100340600-100345400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:100341400-100342000	Weak transcription	Fetal Brain Male	brain
11	chr2:100341400-100343200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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