Variant report

Variant	rs7579193
Chromosome Location	chr2:235163214-235163215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7564216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv584713	chr2:235092011-235236611	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834572	chr2:235146304-235333842	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000127	chr2:235158803-235210293	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:235149400-235171600	Enhancers	HMEC	breast
2	chr2:235152600-235171800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:235154200-235163800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:235156800-235166600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:235159000-235164200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:235159800-235164400	Enhancers	Fetal Brain Male	brain
7	chr2:235160400-235166800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:235161200-235164800	Weak transcription	Placenta	Placenta
9	chr2:235161200-235165000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:235161200-235166600	Weak transcription	Fetal Intestine Small	intestine
11	chr2:235161400-235165200	Weak transcription	Esophagus	oesophagus
12	chr2:235161400-235166400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:235161400-235166400	Weak transcription	HUVEC	blood vessel
14	chr2:235161400-235166600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:235161600-235163600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:235161600-235163600	Weak transcription	NH-A	brain
17	chr2:235161600-235164800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:235161600-235164800	Weak transcription	Pancreas	Pancrea
19	chr2:235161600-235166200	Weak transcription	Osteobl	bone
20	chr2:235161600-235166400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:235161600-235166400	Weak transcription	Fetal Intestine Large	intestine
22	chr2:235161600-235166400	Weak transcription	HSMM	muscle
23	chr2:235161600-235166600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:235161600-235166800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:235161800-235163600	Weak transcription	Brain Germinal Matrix	brain
26	chr2:235161800-235163600	Weak transcription	Fetal Brain Female	brain
27	chr2:235161800-235164000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:235161800-235166200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:235162000-235163600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:235162400-235166600	Enhancers	A549	lung
31	chr2:235162600-235164000	Enhancers	Dnd41	blood
32	chr2:235162600-235166600	Enhancers	NHEK	skin
33	chr2:235162600-235166800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr2:235162800-235164000	Enhancers	NHDF-Ad	bronchial
35	chr2:235162800-235164400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:235162800-235171200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:235162800-235171800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:235163000-235163600	Weak transcription	NHLF	lung
39	chr2:235163200-235163800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr2:235163200-235164000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:235163200-235166600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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