Variant report

Variant	rs7580288
Chromosome Location	chr2:56525387-56525388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7572217	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7598631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599517	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56525800	Weak transcription	HSMM	muscle
3	chr2:56523200-56527400	Enhancers	Adipose Nuclei	Adipose
4	chr2:56523600-56526200	Weak transcription	Fetal Brain Female	brain
5	chr2:56524000-56526000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:56524600-56527400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:56524800-56526200	Enhancers	Left Ventricle	heart
8	chr2:56524800-56527400	Enhancers	Psoas Muscle	Psoas
9	chr2:56525000-56525400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:56525000-56526400	Enhancers	Colon Smooth Muscle	Colon
11	chr2:56525000-56526800	Enhancers	Fetal Brain Male	brain
12	chr2:56525000-56527400	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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