Variant report

Variant	rs7581231
Chromosome Location	chr2:55173581-55173582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:90568357..90570526-chr2:55172089..55173609,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4525734	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55168800-55193400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55170400-55190400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr2:55172200-55174200	Enhancers	Brain Hippocampus Middle	brain
4	chr2:55172400-55173800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:55172400-55173800	Enhancers	HMEC	breast
6	chr2:55172400-55173800	Enhancers	NHLF	lung
7	chr2:55172400-55174000	Enhancers	NHDF-Ad	bronchial
8	chr2:55172400-55174200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:55172400-55174400	Enhancers	Brain Angular Gyrus	brain
10	chr2:55172400-55175400	Enhancers	Fetal Brain Male	brain
11	chr2:55172400-55175600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:55172400-55176000	Enhancers	Fetal Muscle Leg	muscle
13	chr2:55172600-55173600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:55172600-55173600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:55172600-55173600	Enhancers	Brain Cingulate Gyrus	brain
16	chr2:55172600-55173600	Enhancers	Fetal Muscle Trunk	muscle
17	chr2:55172600-55173600	Enhancers	Ovary	ovary
18	chr2:55172600-55173600	Enhancers	Pancreas	Pancrea
19	chr2:55172600-55173600	Enhancers	GM12878-XiMat	blood
20	chr2:55172600-55173600	Enhancers	NHEK	skin
21	chr2:55172600-55173800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:55172600-55173800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:55172600-55173800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:55172600-55173800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:55172600-55173800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr2:55172600-55173800	Enhancers	HSMMtube	muscle
27	chr2:55172600-55174000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:55172600-55174000	Enhancers	Fetal Lung	lung
29	chr2:55172600-55174000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr2:55172600-55174200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:55172600-55174200	Enhancers	Fetal Brain Female	brain
32	chr2:55172600-55175000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr2:55172600-55175200	Enhancers	Osteobl	bone
34	chr2:55172600-55176400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr2:55172800-55173600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:55172800-55173600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr2:55172800-55173600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr2:55172800-55173600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr2:55172800-55173600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:55172800-55173600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:55172800-55173600	Enhancers	Placenta	Placenta
42	chr2:55172800-55173600	Enhancers	Lung	lung
43	chr2:55172800-55173800	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr2:55172800-55174200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr2:55172800-55174400	Enhancers	Brain Germinal Matrix	brain
46	chr2:55172800-55175800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:55172800-55175800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:55173000-55173800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr2:55173000-55174000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
50	chr2:55173000-55174000	Enhancers	Psoas Muscle	Psoas

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