Variant report

Variant	rs7581528
Chromosome Location	chr2:47240149-47240150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:47239533..47242401-chr2:47254885..47256539,3	MCF-7	breast:
2	chr2:47238766..47240614-chr2:47260747..47262492,2	K562	blood:
3	chr2:47213696..47215367-chr2:47239730..47241544,2	MCF-7	breast:
4	chr2:47235055..47237269-chr2:47239920..47242362,2	MCF-7	breast:
5	chr2:47235723..47238887-chr2:47238980..47241912,3	MCF-7	breast:
6	chr2:47230553..47232834-chr2:47238826..47240399,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068724	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11884118	0.84[GIH][hapmap]
rs13423726	0.84[GIH][hapmap]
rs17481182	0.84[GIH][hapmap]
rs17540504	0.82[TSI][hapmap]
rs17540615	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17541307	0.84[GIH][hapmap]
rs2007462	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55944397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6729569	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv457352	chr2:47004788-47325973	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv581749	chr2:47004788-47325973	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
5	nsv524970	chr2:47162739-47302095	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1000377	chr2:47189386-47344029	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv525197	chr2:47210747-47297973	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv517929	chr2:47217094-47243312	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv518312	chr2:47224927-47262137	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv984532	chr2:47237908-47270533	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47213600-47256400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:47214000-47262000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:47214600-47242000	Strong transcription	Thymus	Thymus
4	chr2:47215200-47243800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr2:47215600-47245200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr2:47216400-47241600	Strong transcription	Fetal Thymus	thymus
7	chr2:47222000-47260600	Weak transcription	Small Intestine	intestine
8	chr2:47223600-47246800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:47229200-47243000	Enhancers	Fetal Brain Male	brain
10	chr2:47229200-47248600	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr2:47230200-47302800	Strong transcription	Dnd41	blood
12	chr2:47230800-47243000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr2:47231400-47242000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:47231400-47243000	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr2:47231600-47241200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:47231600-47243000	Strong transcription	Placenta	Placenta
17	chr2:47231600-47243000	Weak transcription	HUVEC	blood vessel
18	chr2:47231800-47243800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:47232000-47241600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:47232000-47265000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:47232400-47241800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:47232400-47245000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:47232400-47257000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:47232800-47244000	Strong transcription	Esophagus	oesophagus
25	chr2:47234400-47283600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:47236000-47243400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:47236000-47278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr2:47236200-47241400	Weak transcription	Psoas Muscle	Psoas
29	chr2:47236200-47241800	Strong transcription	Osteobl	bone
30	chr2:47236400-47243400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:47236400-47243400	Weak transcription	Stomach Mucosa	stomach
32	chr2:47236400-47243600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr2:47236600-47240800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr2:47236600-47241000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr2:47236600-47241200	Strong transcription	Lung	lung
36	chr2:47236600-47241600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr2:47236600-47241800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:47236600-47242400	Weak transcription	NH-A	brain
39	chr2:47236600-47243200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr2:47236600-47253600	Strong transcription	Fetal Intestine Small	intestine
41	chr2:47236600-47259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr2:47236600-47259200	Weak transcription	Fetal Kidney	kidney
43	chr2:47236800-47240400	Strong transcription	Spleen	Spleen
44	chr2:47236800-47242000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:47236800-47243400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr2:47236800-47251600	Weak transcription	Fetal Lung	lung
47	chr2:47237000-47240400	Weak transcription	Right Atrium	heart
48	chr2:47237000-47241200	Strong transcription	NHLF	lung
49	chr2:47237000-47241600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr2:47237000-47243400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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