Variant report

Variant	rs758277
Chromosome Location	chr2:234837737-234837738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:234837130-234837768	HCT-116	colon:	n/a	n/a
2	SMC3	chr2:234837118-234838146	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr2:234837020-234837860	A549	lung:	n/a	n/a
4	CTCF	chr2:234837720-234837870	HEK293	kidney:	n/a	n/a
5	CTCF	chr2:234837680-234837830	GM06990	blood:	n/a	n/a
6	RAD21	chr2:234837069-234837794	SK-N-SH	brain:	n/a	n/a
7	CTCF	chr2:234837074-234838164	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr2:234837700-234837850	GM06990	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234357015..234358200-chr2:234837198..234838061,3	MCF-7	breast:
2	chr2:234835606..234837772-chr2:234955390..234957030,2	K562	blood:
3	chr2:234357304..234357929-chr2:234836996..234837769,2	MCF-7	breast:
4	chr2:234837551..234838340-chr2:235010553..235011295,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1003540	0.88[YRI][hapmap]
rs10166942	0.88[YRI][hapmap]
rs10170399	0.88[YRI][hapmap]
rs10189040	0.88[YRI][hapmap]
rs10929319	0.88[YRI][hapmap]
rs11563060	0.88[YRI][hapmap]
rs1965629	0.88[YRI][hapmap]
rs2108809	0.88[YRI][hapmap]
rs2215173	0.88[YRI][hapmap]
rs2362290	0.88[YRI][hapmap]
rs28946911	0.88[YRI][hapmap]
rs4233636	0.88[YRI][hapmap]
rs4663986	0.88[YRI][hapmap]
rs4663988	0.88[YRI][hapmap]
rs4663990	0.88[YRI][hapmap]
rs6431648	0.88[YRI][hapmap]
rs6709005	0.88[YRI][hapmap]
rs6711120	0.88[YRI][hapmap]
rs6738375	0.88[YRI][hapmap]
rs6738979	0.88[YRI][hapmap]
rs6740118	0.88[YRI][hapmap]
rs737636	0.88[YRI][hapmap]
rs758275	0.88[YRI][hapmap]
rs758276	0.88[YRI][hapmap]
rs7604471	0.88[YRI][hapmap]
rs917435	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234834400-234838000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:234836200-234838000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:234836200-234838000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:234837000-234838400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:234837000-234838600	Enhancers	A549	lung
6	chr2:234837200-234838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:234837400-234839000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:234837600-234838600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr2:234837600-234838800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr2:234837600-234838800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:234837600-234839000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:234837600-234839000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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