Variant report

Variant	rs7583200
Chromosome Location	chr2:149359948-149359949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:149354442..149357102-chr2:149358398..149361183,2	K562	blood:
2	chr2:149350363..149354072-chr2:149357506..149360712,4	MCF-7	breast:
3	chr2:149358544..149360109-chr2:149360161..149362203,2	K562	blood:
4	chr2:149358350..149360776-chr2:149361876..149364323,2	K562	blood:
5	chr2:149359200..149362082-chr2:149364841..149366905,3	K562	blood:

Variant related genes	Relation type
ENSG00000232238	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10164839	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10210601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10497036	0.92[EUR][1000 genomes]
rs11898543	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11901990	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12691798	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1448894	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16828945	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16829008	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16829022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16829052	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17780809	1.00[JPT][hapmap]
rs2382229	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2890923	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4972370	0.83[EUR][1000 genomes]
rs4972371	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs6430319	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6430320	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6430321	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6430331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6712173	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6715405	0.83[EUR][1000 genomes]
rs6725114	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6740827	0.88[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6760718	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7592501	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7595798	0.83[EUR][1000 genomes]
rs7597649	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751831	chr2:149151358-150105603	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1000101	chr2:149165813-149361220	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv868861	chr2:149198443-149434604	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv917109	chr2:149198443-149948302	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1004663	chr2:149214090-149373061	Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1827161	chr2:149352353-149475737	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149352800-149365800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:149359800-149361200	ZNF genes & repeats	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links