Variant report

Variant	rs758328
Chromosome Location	chr4:15964573-15964574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15964256..15965259-chr4:16009992..16010971,12	MCF-7	breast:
2	chr4:15963964..15964719-chr4:16272160..16272812,2	MCF-7	breast:
3	chr4:15964252..15965188-chr4:16010031..16010822,3	MCF-7	breast:
4	chr4:15964314..15965059-chr4:16010048..16010971,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251758	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16892815	1.00[EUR][1000 genomes]
rs16892824	1.00[EUR][1000 genomes]
rs73798807	1.00[EUR][1000 genomes]
rs7686732	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15940200-15983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:15960200-15964600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:15960200-15964600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:15960200-15964800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:15960200-15968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:15963000-15965200	Enhancers	HSMMtube	muscle
7	chr4:15963200-15965000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:15963400-15964800	Flanking Active TSS	Fetal Thymus	thymus
9	chr4:15963400-15965000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:15963400-15965200	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:15963400-15965400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:15963400-15965400	Enhancers	Fetal Muscle Leg	muscle
13	chr4:15963400-15965600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr4:15963600-15964800	Weak transcription	Primary B cells from cord blood	blood
15	chr4:15963600-15964800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr4:15963600-15964800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr4:15963600-15964800	Enhancers	HSMM	muscle
18	chr4:15963600-15965200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:15963600-15965200	Enhancers	Fetal Muscle Trunk	muscle
20	chr4:15963600-15965400	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr4:15963600-15965600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:15963800-15964600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr4:15963800-15965200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:15963800-15965600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr4:15963800-15966200	Enhancers	Stomach Mucosa	stomach
26	chr4:15963800-15967200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr4:15964000-15964800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:15964000-15965400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr4:15964200-15964600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:15964200-15964600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr4:15964200-15964600	Active TSS	Gastric	stomach
32	chr4:15964200-15964800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:15964200-15965000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr4:15964200-15965000	Enhancers	Right Atrium	heart
35	chr4:15964200-15965200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr4:15964200-15965400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr4:15964200-15965600	Enhancers	Thymus	Thymus
38	chr4:15964400-15964600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr4:15964400-15964800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:15964400-15964800	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr4:15964400-15965000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr4:15964400-15965000	Enhancers	Placenta	Placenta
43	chr4:15964400-15965200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:15964400-15965400	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr4:15964400-15965600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:15964400-15965600	Enhancers	Spleen	Spleen

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