Variant report
Variant | rs7583570 |
---|---|
Chromosome Location | chr2:62852926-62852927 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10186082 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10192894 | 0.95[ASN][1000 genomes] |
rs10204410 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1038572 | 0.81[CEU][hapmap] |
rs11125929 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs11125930 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11125934 | 0.82[AFR][1000 genomes] |
rs11893614 | 0.82[AFR][1000 genomes] |
rs12713462 | 0.91[EUR][1000 genomes] |
rs12713465 | 0.88[AFR][1000 genomes] |
rs13396557 | 0.88[AFR][1000 genomes] |
rs13404126 | 0.97[ASN][1000 genomes] |
rs13417156 | 0.96[ASN][1000 genomes] |
rs13422188 | 0.88[AFR][1000 genomes] |
rs1386399 | 1.00[YRI][hapmap] |
rs1386401 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1406002 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1487074 | 0.84[CEU][hapmap] |
rs1527959 | 0.83[AFR][1000 genomes] |
rs1534418 | 0.84[CEU][hapmap] |
rs1534420 | 0.84[CEU][hapmap];1.00[YRI][hapmap] |
rs1601673 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1601674 | 0.87[AFR][1000 genomes] |
rs1830260 | 0.82[AFR][1000 genomes] |
rs1843779 | 0.83[AFR][1000 genomes] |
rs2129509 | 0.82[AFR][1000 genomes] |
rs2204656 | 0.81[CEU][hapmap];1.00[YRI][hapmap] |
rs28798215 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4479415 | 0.82[AFR][1000 genomes] |
rs62180020 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6545957 | 0.81[EUR][1000 genomes] |
rs6545960 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6545961 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6545962 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6545963 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6545965 | 0.82[AFR][1000 genomes] |
rs6545969 | 0.84[CEU][hapmap] |
rs6706506 | 0.82[AFR][1000 genomes] |
rs6714927 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6749020 | 0.82[AFR][1000 genomes] |
rs6752010 | 0.82[AFR][1000 genomes] |
rs6752597 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6757128 | 0.84[CEU][hapmap] |
rs7349258 | 0.82[AFR][1000 genomes] |
rs7558681 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7564277 | 0.81[EUR][1000 genomes] |
rs7564393 | 0.80[EUR][1000 genomes] |
rs7578229 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7607678 | 0.84[ASN][1000 genomes] |
rs9989741 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv535766 | chr2:62177655-62929746 | Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
2 | nsv916190 | chr2:62233785-63006200 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
3 | nsv932487 | chr2:62258290-63006200 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
4 | nsv535767 | chr2:62461582-63413596 | Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
5 | nsv834226 | chr2:62745027-62894013 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
6 | nsv874232 | chr2:62758044-62906084 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
7 | nsv834237 | chr2:62762743-62926036 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:62832200-62868800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr2:62843000-62861000 | Weak transcription | Ovary | ovary |
3 | chr2:62852400-62854400 | Weak transcription | HepG2 | liver |