Variant report

Variant	rs7583684
Chromosome Location	chr2:47376995-47376996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1693888	0.91[ASN][1000 genomes]
rs1693889	0.91[ASN][1000 genomes]
rs17036300	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17036311	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036313	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036316	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036320	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17036325	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1723485	0.91[ASN][1000 genomes]
rs2347617	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4953469	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4953470	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4953471	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56875665	0.81[AMR][1000 genomes]
rs59415749	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713257	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6749284	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6760339	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72810414	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810415	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810417	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72810419	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72877054	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs815812	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
2	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv457374	chr2:47313624-47448865	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
4	nsv581754	chr2:47313624-47448865	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47355600-47377000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:47357000-47385400	Weak transcription	Colon Smooth Muscle	Colon
3	chr2:47357000-47386600	Weak transcription	Fetal Heart	heart
4	chr2:47357000-47386800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:47357200-47386400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:47357400-47385400	Weak transcription	Fetal Intestine Large	intestine
7	chr2:47360600-47386800	Weak transcription	Stomach Mucosa	stomach
8	chr2:47363400-47386400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:47365000-47384000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:47366000-47377000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:47366000-47383000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr2:47366200-47397000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:47366600-47380000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:47366800-47399400	Strong transcription	Fetal Thymus	thymus
15	chr2:47367000-47379600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr2:47367000-47401200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr2:47367200-47379000	Strong transcription	Liver	Liver
18	chr2:47367200-47379800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr2:47367200-47381600	Strong transcription	NHDF-Ad	bronchial
20	chr2:47367200-47382200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:47367200-47383600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr2:47367200-47402000	Weak transcription	Esophagus	oesophagus
23	chr2:47367600-47377000	Weak transcription	Lung	lung
24	chr2:47367600-47382200	Weak transcription	Spleen	Spleen
25	chr2:47367600-47385400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:47367600-47386800	Weak transcription	Right Ventricle	heart
27	chr2:47367600-47387400	Weak transcription	Pancreas	Pancrea
28	chr2:47368800-47385200	Weak transcription	Fetal Intestine Small	intestine
29	chr2:47369000-47385600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:47369200-47386800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:47369600-47384600	Weak transcription	HUVEC	blood vessel
32	chr2:47369600-47386200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:47369800-47386800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:47369800-47386800	Weak transcription	Psoas Muscle	Psoas
35	chr2:47369800-47391200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:47370000-47379400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:47370000-47380800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr2:47370000-47389600	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr2:47370400-47378600	Strong transcription	Primary B cells from cord blood	blood
40	chr2:47370400-47379800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr2:47370600-47377000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:47371000-47377600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr2:47371000-47377800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr2:47371000-47378600	Strong transcription	Brain Hippocampus Middle	brain
45	chr2:47371000-47378800	Strong transcription	Thymus	Thymus
46	chr2:47371000-47381000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr2:47371200-47385800	Weak transcription	Fetal Kidney	kidney
48	chr2:47371200-47388200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr2:47371400-47386600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr2:47371600-47389800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links