Variant report

Variant	rs7584360
Chromosome Location	chr2:151971783-151971784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10174574	0.98[ASN][1000 genomes]
rs10183699	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10193451	0.81[ASN][1000 genomes]
rs10221581	0.93[ASN][1000 genomes]
rs10930435	0.99[ASN][1000 genomes]
rs1115140	0.97[ASN][1000 genomes]
rs11883593	0.99[ASN][1000 genomes]
rs11883594	0.99[ASN][1000 genomes]
rs11889216	0.97[ASN][1000 genomes]
rs12692945	0.81[ASN][1000 genomes]
rs1351930	0.99[ASN][1000 genomes]
rs1485097	0.99[ASN][1000 genomes]
rs1485112	0.99[ASN][1000 genomes]
rs1485113	0.99[ASN][1000 genomes]
rs1485117	0.98[ASN][1000 genomes]
rs1843271	0.99[ASN][1000 genomes]
rs2086914	0.99[ASN][1000 genomes]
rs35956016	0.91[ASN][1000 genomes]
rs3940993	0.98[ASN][1000 genomes]
rs4606923	0.97[ASN][1000 genomes]
rs4664951	0.99[ASN][1000 genomes]
rs4664952	0.99[ASN][1000 genomes]
rs4664953	0.95[ASN][1000 genomes]
rs6433139	0.83[CHB][hapmap]
rs6433191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6707611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725316	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731235	0.81[ASN][1000 genomes]
rs6735499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567416	0.80[ASN][1000 genomes]
rs7569794	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7586120	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2762288	chr2:151970391-151983277	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151968800-151974800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:151970200-151973800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:151971000-151971800	Enhancers	Fetal Muscle Leg	muscle

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