Variant report

Variant	rs7584473
Chromosome Location	chr2:33421017-33421018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10205739	0.85[ASN][1000 genomes]
rs10211514	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1065324	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11124310	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11681694	0.87[ASN][1000 genomes]
rs12104955	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12611532	0.89[EUR][1000 genomes]
rs12611549	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617948	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12617970	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12620853	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1377947	0.86[ASN][1000 genomes]
rs1454378	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17565877	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17566780	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17567417	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17568051	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17641062	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17641180	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17641906	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17642074	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1869542	0.88[ASN][1000 genomes]
rs1947444	0.84[EUR][1000 genomes]
rs2061026	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2061027	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290448	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2367619	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2367620	0.86[EUR][1000 genomes]
rs2367623	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2367624	0.85[ASN][1000 genomes]
rs34577456	0.88[EUR][1000 genomes]
rs4474865	0.80[EUR][1000 genomes]
rs4670186	0.84[EUR][1000 genomes]
rs4670245	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670251	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670252	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670307	0.86[ASN][1000 genomes]
rs4670660	0.83[EUR][1000 genomes]
rs4670778	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4670822	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670828	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670833	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670836	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670849	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670857	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670860	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4670863	0.88[EUR][1000 genomes]
rs4670928	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4671010	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4671024	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4671035	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5006120	0.89[EUR][1000 genomes]
rs5006121	0.81[EUR][1000 genomes]
rs5006122	0.82[EUR][1000 genomes]
rs5006124	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5006125	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5006126	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55911139	0.85[EUR][1000 genomes]
rs56163907	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56282338	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56988251	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58774073	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58920936	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs60000782	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60558455	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62146677	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62146678	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62146679	0.87[EUR][1000 genomes]
rs62146726	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62146732	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6543698	0.89[EUR][1000 genomes]
rs6543699	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6543700	0.89[EUR][1000 genomes]
rs6705772	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6707904	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6707962	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6712473	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6715793	0.82[EUR][1000 genomes]
rs6720059	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6720185	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6720405	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6736908	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6748806	0.89[EUR][1000 genomes]
rs6751657	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6759943	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs726429	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7423390	0.88[ASN][1000 genomes]
rs7580348	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581446	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7595240	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608222	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7608535	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9308931	0.88[ASN][1000 genomes]
rs964702	0.88[ASN][1000 genomes]
rs964703	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs996102	0.88[ASN][1000 genomes]
rs996103	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998167	chr2:33074313-33541100	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535623	chr2:33074313-33541100	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1005435	chr2:33136117-33747159	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv535624	chr2:33136117-33747159	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
5	esv33628	chr2:33257484-33455355	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv873790	chr2:33369582-33466483	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33403800-33489800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33408000-33422400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:33408200-33423000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:33409200-33441600	Weak transcription	Psoas Muscle	Psoas
5	chr2:33410400-33423800	Weak transcription	Placenta	Placenta
6	chr2:33410400-33438000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:33411600-33421200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:33412400-33421400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:33414000-33427800	Weak transcription	Right Ventricle	heart
10	chr2:33414000-33434200	Weak transcription	HUVEC	blood vessel
11	chr2:33414200-33422400	Weak transcription	Brain Hippocampus Middle	brain
12	chr2:33414600-33422400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr2:33414600-33455400	Weak transcription	Fetal Stomach	stomach
14	chr2:33415000-33434400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:33415200-33427600	Weak transcription	Left Ventricle	heart
16	chr2:33415200-33441600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr2:33415400-33441600	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:33415600-33427000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr2:33415600-33431800	Weak transcription	NHDF-Ad	bronchial
20	chr2:33415600-33434200	Weak transcription	K562	blood
21	chr2:33415800-33431800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:33417000-33421800	Weak transcription	Fetal Heart	heart
23	chr2:33417400-33431800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:33418200-33422000	Weak transcription	Liver	Liver
25	chr2:33418200-33433400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:33418400-33435000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr2:33418800-33427000	Weak transcription	Ovary	ovary
28	chr2:33419000-33434200	Weak transcription	NH-A	brain
29	chr2:33419400-33427400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr2:33419800-33427800	Weak transcription	Aorta	Aorta
31	chr2:33420000-33432000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:33420600-33421200	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr2:33420600-33423000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:33420800-33430400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:33421000-33426800	Weak transcription	Osteobl	bone
36	chr2:33421000-33427400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr2:33421000-33427400	Weak transcription	NHLF	lung

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