Variant report

Variant	rs7584732
Chromosome Location	chr2:178589291-178589292
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178088476..178090203-chr2:178588008..178591077,3	K562	blood:
2	chr2:178259134..178259698-chr2:178588986..178589773,2	K562	blood:
3	chr2:178129171..178130998-chr2:178588064..178589614,2	K562	blood:
4	chr2:178076844..178079068-chr2:178587919..178590256,2	K562	blood:
5	chr2:178578841..178579788-chr2:178589264..178590054,2	K562	blood:
6	chr2:178354172..178355030-chr2:178589245..178590053,2	K562	blood:
7	chr2:178029060..178030036-chr2:178589141..178590045,3	K562	blood:
8	chr2:178077568..178079461-chr2:178587919..178590496,2	K562	blood:
9	chr2:178561522..178564195-chr2:178587506..178589643,2	K562	blood:
10	chr2:178354401..178354989-chr2:178589086..178589867,2	MCF-7	breast:
11	chr2:178148139..178151111-chr2:178587913..178590676,3	K562	blood:
12	chr2:178589262..178589874-chr2:178628223..178628806,2	MCF-7	breast:
13	chr2:178354261..178355087-chr2:178589085..178589968,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000229941	Chromatin interaction
ENSG00000236501	Chromatin interaction
ENSG00000229337	Chromatin interaction
ENSG00000263721	Chromatin interaction
ENSG00000170144	Chromatin interaction
ENSG00000116044	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61194566	1.00[AFR][1000 genomes]
rs73028328	0.93[AFR][1000 genomes]
rs7591504	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178585800-178589800	Enhancers	Fetal Kidney	kidney
2	chr2:178587800-178594000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr2:178589000-178589400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:178589000-178589400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
5	chr2:178589000-178589400	Enhancers	Colon Smooth Muscle	Colon
6	chr2:178589000-178589600	Enhancers	Fetal Intestine Small	intestine
7	chr2:178589000-178589600	Enhancers	HepG2	liver
8	chr2:178589200-178589400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:178589200-178589400	Flanking Active TSS	Brain Angular Gyrus	brain
10	chr2:178589200-178589400	Flanking Active TSS	Brain Cingulate Gyrus	brain
11	chr2:178589200-178589400	Enhancers	Brain Substantia Nigra	brain
12	chr2:178589200-178589400	Enhancers	Fetal Brain Male	brain
13	chr2:178589200-178589400	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr2:178589200-178589600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr2:178589200-178589600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:178589200-178589600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:178589200-178589600	Enhancers	Liver	Liver
18	chr2:178589200-178589600	Active TSS	Brain Anterior Caudate	brain
19	chr2:178589200-178589600	Enhancers	Brain Hippocampus Middle	brain
20	chr2:178589200-178589600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr2:178589200-178589600	Enhancers	Fetal Stomach	stomach
22	chr2:178589200-178589600	Enhancers	Stomach Mucosa	stomach
23	chr2:178589200-178589600	Flanking Active TSS	HUVEC	blood vessel
24	chr2:178589200-178589800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr2:178589200-178589800	Enhancers	Fetal Lung	lung
26	chr2:178589200-178593000	Enhancers	Ovary	ovary

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