Variant report

Variant	rs7585074
Chromosome Location	chr2:12177316-12177317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10929781	0.80[EUR][1000 genomes]
rs12471493	0.80[EUR][1000 genomes]
rs12692452	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12987412	0.80[EUR][1000 genomes]
rs13002231	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13007105	0.98[EUR][1000 genomes]
rs1550395	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1550396	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2165219	0.80[EUR][1000 genomes]
rs2165220	0.80[EUR][1000 genomes]
rs7560369	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs7584343	0.81[EUR][1000 genomes]
rs7584367	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12171200-12178000	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:12173400-12177600	Enhancers	Primary B cells from cord blood	blood
3	chr2:12174800-12177800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:12175200-12177600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:12175400-12177800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr2:12175400-12178000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr2:12175400-12178000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:12175600-12177800	Enhancers	Primary T cells from cord blood	blood
9	chr2:12175600-12178000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:12175600-12178000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr2:12175800-12177800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr2:12175800-12177800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:12175800-12178000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:12176400-12177800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr2:12176800-12177600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:12176800-12177800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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