Variant report

Variant	rs7585473
Chromosome Location	chr2:95740100-95740101
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:95734957..95736843-chr2:95739630..95742523,2	K562	blood:
2	chr2:95724511..95727645-chr2:95737663..95740205,3	MCF-7	breast:
3	chr2:95722359..95726880-chr2:95740082..95744931,5	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10172167	0.81[CEU][hapmap]
rs17119148	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs1875402	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1966272	0.84[EUR][1000 genomes]
rs2001254	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2098768	0.84[EUR][1000 genomes]
rs2291991	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2320619	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2320620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2320621	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2320624	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3105098	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3105099	0.89[JPT][hapmap]
rs3105100	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3105101	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3105102	0.86[EUR][1000 genomes]
rs3105104	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3105105	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3112221	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3112222	0.88[EUR][1000 genomes]
rs3112223	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3112225	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3112228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3112229	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3112230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3112231	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3112982	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3112983	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3112984	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3112986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3112987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3112988	0.91[ASN][1000 genomes]
rs3112990	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3112995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs3112996	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs3112997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3112999	0.83[EUR][1000 genomes]
rs3113000	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3113001	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3113002	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4241315	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4555374	0.81[CEU][hapmap]
rs4564804	0.81[CEU][hapmap]
rs4854241	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs4854243	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4854244	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4854247	0.86[EUR][1000 genomes]
rs4854249	0.83[EUR][1000 genomes]
rs6708474	0.82[CEU][hapmap]
rs6719098	0.86[EUR][1000 genomes]
rs6723333	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6725821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7565772	0.95[CEU][hapmap];0.86[CHB][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7582368	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs872580	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9324212	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005016	chr2:95327875-95914467	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1003666	chr2:95618109-95772924	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv817258	chr2:95618109-96340788	Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv482276	chr2:95711972-95888406	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv963662	chr2:95739492-95770323	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:95729800-95740600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:95732200-95742400	Weak transcription	Pancreas	Pancrea
3	chr2:95733400-95742400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:95734200-95742400	Weak transcription	Right Atrium	heart
5	chr2:95737200-95741400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:95737200-95742400	Enhancers	Brain Angular Gyrus	brain
7	chr2:95737200-95742400	Enhancers	Brain Anterior Caudate	brain
8	chr2:95737200-95742400	Enhancers	Brain Hippocampus Middle	brain
9	chr2:95737400-95740200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:95737400-95742400	Enhancers	Brain Cingulate Gyrus	brain
11	chr2:95737400-95742400	Enhancers	Brain Substantia Nigra	brain
12	chr2:95737800-95742400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:95738000-95740200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:95738400-95740200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr2:95739000-95740400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:95739000-95742000	Enhancers	Primary hematopoietic stem cells	blood
17	chr2:95739000-95742600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:95739200-95740400	Enhancers	Fetal Kidney	kidney
19	chr2:95739200-95740600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:95739200-95741200	Enhancers	HSMMtube	muscle
21	chr2:95739400-95740400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:95739400-95740600	Enhancers	HSMM	muscle
23	chr2:95739400-95741200	Enhancers	GM12878-XiMat	blood
24	chr2:95739600-95741400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr2:95739600-95741600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:95739600-95742200	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr2:95739600-95742400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr2:95739600-95742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:95739800-95741400	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr2:95739800-95741400	Enhancers	Lung	lung
31	chr2:95739800-95741800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr2:95739800-95743200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr2:95740000-95740200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr2:95740000-95740400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr2:95740000-95740400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr2:95740000-95740400	Bivalent Enhancer	Placenta	Placenta
37	chr2:95740000-95740400	Flanking Active TSS	Thymus	Thymus
38	chr2:95740000-95740800	Weak transcription	Spleen	Spleen
39	chr2:95740000-95741800	Enhancers	Fetal Lung	lung
40	chr2:95740000-95742000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr2:95740000-95743000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
42	chr2:95740000-95743200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:95740000-95743200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
44	chr2:95740000-95743200	Flanking Active TSS	Fetal Thymus	thymus
45	chr2:95740000-95743400	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links