Variant report

Variant	rs7585510
Chromosome Location	chr2:114020911-114020912
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:9)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223
2	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223
3	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223
4	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223
5	lnc-PSD4-1	chr2:114020855-114020939	ENSG00000189223
6	lnc-PSD4-1	chr2:114020855-114020939	ENSG00000189223.9
7	lnc-PSD4-1	chr2:114020884-114021031	NONHSAT073773
8	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223.9
9	lnc-PSD4-1	chr2:114020855-114021031	ENSG00000189223.9

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3053159	0.87[EUR][1000 genomes]
rs6542125	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6542126	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67081417	0.88[ASN][1000 genomes]
rs6758928	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67626501	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72831838	0.88[EUR][1000 genomes]
rs72954658	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558326	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580516	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595282	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508162	chr2:113983043-114099966	Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv535895	chr2:114015492-114037018	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113999600-114028400	Weak transcription	Ovary	ovary
2	chr2:114010200-114030400	Weak transcription	GM12878-XiMat	blood
3	chr2:114010400-114022400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:114015200-114022400	Weak transcription	Fetal Thymus	thymus
5	chr2:114015200-114022800	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:114015800-114023600	Weak transcription	HSMM	muscle
7	chr2:114016200-114022200	Weak transcription	Primary T cells from cord blood	blood
8	chr2:114016200-114023600	Weak transcription	HSMMtube	muscle
9	chr2:114016200-114028000	Weak transcription	Fetal Brain Female	brain
10	chr2:114016400-114026000	Weak transcription	Fetal Heart	heart
11	chr2:114017200-114021200	Weak transcription	Lung	lung
12	chr2:114017600-114021000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:114017600-114021200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:114018800-114023800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:114019000-114022600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:114019200-114021000	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:114019200-114021000	Weak transcription	Placenta	Placenta
18	chr2:114019200-114021600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:114019200-114022200	Weak transcription	Fetal Kidney	kidney
20	chr2:114019200-114024000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:114019200-114026800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr2:114019400-114021200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr2:114019400-114021200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr2:114019400-114022400	Weak transcription	Adipose Nuclei	Adipose
25	chr2:114019400-114028200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:114019600-114021000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr2:114019600-114021200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:114019600-114026000	Weak transcription	Spleen	Spleen
29	chr2:114020000-114021000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:114020000-114021400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:114020000-114027800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr2:114020400-114021400	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr2:114020400-114023800	Enhancers	Liver	Liver
34	chr2:114020600-114023000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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