Variant report

Variant	rs7585663
Chromosome Location	chr2:73661357-73661358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73612204..73614467-chr2:73659313..73661505,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116127	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10496189	0.86[EUR][1000 genomes]
rs11890811	0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12475618	0.86[EUR][1000 genomes]
rs12479243	0.82[AMR][1000 genomes]
rs1358452	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009036	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17009051	0.86[EUR][1000 genomes]
rs17009061	0.86[EUR][1000 genomes]
rs17009070	0.86[EUR][1000 genomes]
rs2140194	0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2421545	0.81[YRI][hapmap]
rs28730853	0.86[EUR][1000 genomes]
rs60130127	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61581348	0.86[EUR][1000 genomes]
rs6711285	0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6718672	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6735139	0.83[AMR][1000 genomes]
rs7558613	0.86[EUR][1000 genomes]
rs7571147	0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577699	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7587537	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7599369	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7603754	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2577218	chr2:73660263-73661690	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73622800-73662800	Weak transcription	Right Ventricle	heart
2	chr2:73626800-73662600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr2:73626800-73662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr2:73626800-73662800	Weak transcription	Aorta	Aorta
5	chr2:73626800-73663400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:73626800-73664000	Weak transcription	Thymus	Thymus
7	chr2:73627400-73664400	Weak transcription	Pancreas	Pancrea
8	chr2:73628800-73663000	Weak transcription	Hela-S3	cervix
9	chr2:73633200-73662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:73634000-73661400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:73634000-73663200	Weak transcription	Psoas Muscle	Psoas
12	chr2:73634400-73662000	Weak transcription	Lung	lung
13	chr2:73634400-73662800	Weak transcription	Esophagus	oesophagus
14	chr2:73634600-73661800	Weak transcription	Brain Germinal Matrix	brain
15	chr2:73637600-73662800	Weak transcription	Fetal Stomach	stomach
16	chr2:73637800-73662400	Weak transcription	A549	lung
17	chr2:73637800-73663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:73637800-73676200	Weak transcription	Fetal Brain Male	brain
19	chr2:73638600-73661400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:73639200-73675400	Weak transcription	HMEC	breast
21	chr2:73642200-73666000	Weak transcription	NHLF	lung
22	chr2:73643400-73663000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr2:73644600-73662800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:73645400-73662600	Weak transcription	Brain Substantia Nigra	brain
25	chr2:73645400-73675200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:73645600-73661800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:73645600-73663000	Weak transcription	NHDF-Ad	bronchial
28	chr2:73645600-73675200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:73645600-73676600	Weak transcription	NH-A	brain
30	chr2:73645600-73685600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr2:73645800-73662600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr2:73645800-73662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:73646000-73664000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:73646200-73661400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr2:73646200-73661800	Strong transcription	Dnd41	blood
36	chr2:73646200-73662800	Weak transcription	Brain Anterior Caudate	brain
37	chr2:73646400-73675200	Weak transcription	Osteobl	bone
38	chr2:73646600-73662600	Weak transcription	Fetal Brain Female	brain
39	chr2:73646600-73662800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr2:73646600-73663400	Weak transcription	Fetal Heart	heart
41	chr2:73646600-73664200	Weak transcription	Small Intestine	intestine
42	chr2:73646800-73662600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr2:73646800-73662800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr2:73646800-73663200	Weak transcription	HSMMtube	muscle
45	chr2:73647000-73684000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr2:73648400-73663200	Weak transcription	Fetal Kidney	kidney
47	chr2:73648600-73662600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:73649400-73663000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:73649600-73668000	Weak transcription	Gastric	stomach
50	chr2:73650200-73662800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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