Variant report

Variant	rs7586037
Chromosome Location	chr2:11612970-11612971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11896096	0.85[EUR][1000 genomes]
rs56044763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56377296	0.84[AFR][1000 genomes]
rs57030985	0.84[AFR][1000 genomes]
rs6751942	0.84[AFR][1000 genomes]
rs73915193	0.89[AFR][1000 genomes]
rs73917213	0.98[AFR][1000 genomes]
rs73917218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73917220	0.85[EUR][1000 genomes]
rs7598990	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11607000-11621200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:11607200-11622400	Weak transcription	Spleen	Spleen
3	chr2:11607600-11618000	Weak transcription	Primary T cells from cord blood	blood
4	chr2:11612000-11613800	Enhancers	HepG2	liver
5	chr2:11612600-11613200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:11612600-11613600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:11612800-11614800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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