Variant report

Variant	rs7587087
Chromosome Location	chr2:10359112-10359113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10357831..10359607-chr2:10365467..10367215,2	K562	blood:
2	chr2:10347041..10349707-chr2:10357445..10360186,3	K562	blood:
3	chr2:10260780..10262972-chr2:10358625..10360506,2	K562	blood:
4	chr2:10357604..10359556-chr2:10380335..10382932,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272524	Chromatin interaction
ENSG00000171848	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1861234	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4669555	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4669557	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6741629	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6748762	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs759347	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs759348	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs887962	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv34981	chr2:10341468-10384302	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv35171	chr2:10341468-10384302	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756904	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	esv2759024	chr2:10347142-10406706	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv873637	chr2:10349858-10381434	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv962058	chr2:10350771-10376962	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv873638	chr2:10351852-10381434	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10339400-10362000	Weak transcription	Fetal Intestine Small	intestine
2	chr2:10343600-10360400	Weak transcription	HSMM	muscle
3	chr2:10349800-10359400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:10349800-10362400	Weak transcription	Spleen	Spleen
5	chr2:10350400-10375200	Weak transcription	Right Atrium	heart
6	chr2:10357200-10360400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:10357200-10362400	Weak transcription	K562	blood
8	chr2:10357400-10361400	Weak transcription	A549	lung
9	chr2:10357600-10360200	Weak transcription	Fetal Brain Female	brain
10	chr2:10357600-10360400	Weak transcription	Osteobl	bone
11	chr2:10357600-10361200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:10357800-10359800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:10357800-10360200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:10357800-10360800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:10357800-10362400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:10357800-10368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:10358000-10361400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr2:10358400-10359400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:10358400-10361600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:10358600-10361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:10358600-10363800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:10358800-10361800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr2:10359000-10359600	Enhancers	Fetal Intestine Large	intestine
24	chr2:10359000-10359600	Bivalent Enhancer	HepG2	liver
25	chr2:10359000-10362800	Enhancers	Brain Germinal Matrix	brain

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