Variant report

Variant	rs75871344
Chromosome Location	chr9:95947240-95947241
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95856307..95858930-chr9:95945344..95947454,2	MCF-7	breast:
2	chr9:95895042..95899051-chr9:95945154..95949540,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223446	Chromatin interaction
ENSG00000165233	Chromatin interaction
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv824983	chr9:95902154-95978408	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv430082	chr9:95905745-96095045	Genic enhancers Enhancers Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv614880	chr9:95930572-95978265	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
7	esv3494114	chr9:95945281-95948679	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3494115	chr9:95945281-95948679	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95945800-95947400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:95945800-95947800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr9:95945800-95947800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr9:95945800-95948000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr9:95945800-95949200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:95945800-95949600	Active TSS	Brain Cingulate Gyrus	brain
7	chr9:95946000-95947400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95946000-95947400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:95946000-95947400	Active TSS	Aorta	Aorta
10	chr9:95946000-95947400	Flanking Bivalent TSS/Enh	Thymus	Thymus
11	chr9:95946000-95947400	Flanking Active TSS	Spleen	Spleen
12	chr9:95946000-95947800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:95946000-95948000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:95946000-95948200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr9:95946200-95947400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr9:95946200-95947400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:95946200-95947400	Active TSS	Primary T cells from cord blood	blood
18	chr9:95946200-95947400	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr9:95946200-95947400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:95946200-95947400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr9:95946200-95947400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:95946200-95947400	Enhancers	Liver	Liver
23	chr9:95946200-95947400	Active TSS	Gastric	stomach
24	chr9:95946200-95947600	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:95946200-95947600	Weak transcription	Fetal Brain Male	brain
26	chr9:95946200-95947600	Active TSS	Ovary	ovary
27	chr9:95946200-95947600	Active TSS	Psoas Muscle	Psoas
28	chr9:95946200-95947600	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr9:95946200-95947800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr9:95946200-95947800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:95946200-95947800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:95946200-95947800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
33	chr9:95946200-95947800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
34	chr9:95946200-95947800	Active TSS	Fetal Brain Female	brain
35	chr9:95946200-95947800	Weak transcription	Fetal Heart	heart
36	chr9:95946200-95947800	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr9:95946200-95947800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr9:95946200-95947800	Active TSS	HepG2	liver
39	chr9:95946200-95948000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr9:95946200-95948200	Active TSS	H9 Cell Line	embryonic stem cell
41	chr9:95946200-95948200	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:95946200-95948200	Active TSS	Brain Anterior Caudate	brain
43	chr9:95946200-95948400	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr9:95946200-95948600	Active TSS	Brain Angular Gyrus	brain
45	chr9:95946200-95948600	Active TSS	Colon Smooth Muscle	Colon
46	chr9:95946200-95948600	Active TSS	Duodenum Mucosa	Duodenum
47	chr9:95946200-95948600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
48	chr9:95946200-95948600	Active TSS	Right Ventricle	heart
49	chr9:95946200-95948800	Active TSS	Rectal Smooth Muscle	rectum
50	chr9:95946200-95949400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links