Variant report

Variant	rs758768
Chromosome Location	chr19:42053554-42053555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:42036448..42038567-chr19:42052200..42053873,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268355	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs887499	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911770	chr19:41962486-42066279	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv911771	chr19:41962486-42085873	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1055515	chr19:41968797-42057334	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv911772	chr19:41985624-42066279	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv911773	chr19:42001210-42085873	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv978751	chr19:42036596-42073874	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42050600-42055000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr19:42051400-42055800	Enhancers	Primary hematopoietic stem cells	blood
3	chr19:42051800-42053600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr19:42051800-42053600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr19:42051800-42054200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr19:42051800-42055400	Enhancers	Fetal Thymus	thymus
7	chr19:42052000-42053600	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr19:42052000-42053600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
9	chr19:42052200-42053600	Enhancers	Fetal Lung	lung
10	chr19:42052600-42053800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:42052600-42054600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr19:42052800-42053600	Enhancers	Fetal Muscle Leg	muscle
13	chr19:42052800-42055200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:42052800-42055200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr19:42052800-42055200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr19:42053000-42053600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr19:42053000-42054200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:42053000-42054600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:42053000-42054600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr19:42053000-42054600	Weak transcription	Fetal Intestine Small	intestine
21	chr19:42053000-42055200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr19:42053000-42055200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr19:42053000-42055200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr19:42053000-42055200	Enhancers	GM12878-XiMat	blood
25	chr19:42053200-42053800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr19:42053200-42054400	Enhancers	Adipose Nuclei	Adipose
27	chr19:42053200-42054600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr19:42053200-42054600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:42053200-42055000	Enhancers	Primary B cells from cord blood	blood
30	chr19:42053200-42055000	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr19:42053200-42055200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:42053200-42055200	Enhancers	Primary B cells from peripheral blood	blood
33	chr19:42053200-42055200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr19:42053200-42055200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr19:42053200-42055200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr19:42053200-42055200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr19:42053200-42055200	Weak transcription	Thymus	Thymus
38	chr19:42053200-42056000	Weak transcription	Placenta	Placenta
39	chr19:42053200-42058200	Weak transcription	Lung	lung
40	chr19:42053400-42053600	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr19:42053400-42053800	Weak transcription	Spleen	Spleen
42	chr19:42053400-42053800	Weak transcription	HUVEC	blood vessel
43	chr19:42053400-42055000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr19:42053400-42055000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr19:42053400-42055200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr19:42053400-42055200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr19:42053400-42055200	Weak transcription	Duodenum Mucosa	Duodenum

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