Variant report

Variant	rs7589555
Chromosome Location	chr2:183353615-183353616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:183344989..183346517-chr2:183352874..183355064,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11883669	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11884886	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11892848	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12616179	0.82[EUR][1000 genomes]
rs12616229	0.82[EUR][1000 genomes]
rs12622605	0.82[EUR][1000 genomes]
rs12623018	0.83[EUR][1000 genomes]
rs13400207	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1430142	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1430143	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1430144	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1430145	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17265294	0.86[EUR][1000 genomes]
rs2099185	0.82[EUR][1000 genomes]
rs2368297	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2368298	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2368299	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2887208	0.81[EUR][1000 genomes]
rs35182213	0.83[EUR][1000 genomes]
rs35368292	0.85[EUR][1000 genomes]
rs4666587	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666846	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4666851	0.82[EUR][1000 genomes]
rs55986741	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67259847	0.81[EUR][1000 genomes]
rs6740244	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6747821	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6758298	0.82[EUR][1000 genomes]
rs6760589	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7563753	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7578481	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7578703	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7592388	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7601804	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183343200-183353800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:183347800-183355800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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